STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yadFCarbonic anhydrase; Reversible hydration of carbon dioxide. Belongs to the beta-class carbonic anhydrase family. (214 aa)    
Predicted Functional Partners:
moaA
Molybdenum cofactor biosynthesis protein A; Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate.
       0.621
ABO_0139
Anhydrase, family 3 protein; Identified by sequencesimilarity; putative InterPro: Bacterial transferase hexapeptide repeat; Family membership.
    
 
 0.497
ABO_0792
Anhydrase, family 3 protein; Identified by sequencesimilarity; putative InterPro: Bacterial transferase hexapeptide repeat; Family membership.
    
 
 0.497
ABO_1682
(Carbonic anhydrases/acetyltransferases, isoleucine patch superfamilyprotein, putative) identified by sequencesimilarity; putative InterPro: Bacterial transferase hexapeptide repeat; Family membership.
    
 
 0.497
slyD
Identified by sequence similarity; putative InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); High confidence in function and specificity.
     
 0.461
ABO_1512
Sulfate permease protein; Identified by match to PFAM protein family HMMPF04235 InterPro: Sulfate transporter; Family membership.
 
  
 0.437
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.