Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2368Probable ATP-binding ABC transporter protein; Family membership. (254 aa)    
Predicted Functional Partners:
ABO_2369
Fe3+-siderophore ABC transporter permease protein; Family membership; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
 0.999
ABO_2370
Identified by sequence similarity; putative InterPro: Periplasmic binding protein; Family membership.
 
 
 0.991
cobQ
Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily.
 
  
 0.949
ABO_2367
Acid--ammonia (or amine) ligases (amide synthases) identified by sequencesimilarity; putative InterPro: Cobyrinic acid ac-diamide synthase; Specificity unclear.
   
 0.861
ABO_2371
TonB-dependent receptor protein; Identified by match to PFAM protein family HMMPF00593 InterPro: TonB-dependent receptor protein; Family membership.
 
   
 0.819
cobO
cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
      0.760
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
  
  
 0.612
znuB
(zinc ABC transporter permease protein ZnuB) identified by match to PFAM protein family HMMPF01032 InterPro: ABC 3 transport family; Family membership.
   
 0.467
ABO_1727
Conserved hypothetical protein.
  
     0.448
fecA
FecA-like outer membrane receptor identified by sequence similarity; putative; High confidence in function and specificity.
 
  
 0.411
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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