Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Score
ABO_2371TonB-dependent receptor protein; Identified by match to PFAM protein family HMMPF00593 InterPro: TonB-dependent receptor protein; Family membership. (616 aa)    
Predicted Functional Partners:
tonB2
Ferric siderophore transport system,periplasmicbinding prot; Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy-requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins. Belongs to the TonB family.
 
 
 
 0.922
ABO_2369
Fe3+-siderophore ABC transporter permease protein; Family membership; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
   
 0.863
ABO_2370
Identified by sequence similarity; putative InterPro: Periplasmic binding protein; Family membership.
 
   
 0.863
ABO_2368
Probable ATP-binding ABC transporter protein; Family membership.
 
   
 0.819
cobO
cob(I)yrinic acid a,c-diamide adenosyltransferase; Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids.
 
  
 0.743
fhuA
Ferrichrome-iron receptor precursor (Ferric hydroxamate uptake) (Ferric hydroxamate receptor)., TonB-dependent siderophore receptor, TonB-dependent Receptor Plug Domain, TonB-siderophor: TonB-dependent siderophore receptor; High confidence in function and specificity.
  
   
 0.626
ABO_2367
Acid--ammonia (or amine) ligases (amide synthases) identified by sequencesimilarity; putative InterPro: Cobyrinic acid ac-diamide synthase; Specificity unclear.
  
  
 0.579
ABO_1104
Outer membrane siderophore receptor putative identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Function unclear.
 
   
 0.549
tonB
TonB; Periplasmic protein TonB, links inner and outer membranes; Family membership.
   
 
 0.460
ABO_0757
Conserved hypothetical protein, has certain similarity to proline-rich C-terminus of TolA (PA0971) of Pseudomonas aeruginosa PAO1.
   
 
 0.460
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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