Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccpR(Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. (402 aa)    
Predicted Functional Partners:
ABO_2373
Hypothetical protein.
 
     0.955
ABO_2375
Conserved hypothetical protein.
       0.782
ABO_1922
Outer membrane protein W precursor., OmpW family; Specificity unclear.
   
  
 0.501
ABO_2372
Hypothetical protein.
       0.491
hemF
Coproporphyrinogen oxidase; Identified by match to TIGR protein family HMMTIGR00538 InterPro: Oxygen-independent coproporphyrinogen III oxidase HemN; High confidence in function and specificity; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
   
  
 0.480
ccoO-1
Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership.
  
  
 0.454
sodB
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
   
  
 0.451
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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