Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ABO_1922 | ccoO-1 | ABO_1922 | ABO_1350 | Outer membrane protein W precursor., OmpW family; Specificity unclear. | Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership. | 0.765 |
ABO_1922 | ccpR | ABO_1922 | ABO_2374 | Outer membrane protein W precursor., OmpW family; Specificity unclear. | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | 0.406 |
ABO_1922 | hemF | ABO_1922 | ABO_1342 | Outer membrane protein W precursor., OmpW family; Specificity unclear. | Coproporphyrinogen oxidase; Identified by match to TIGR protein family HMMTIGR00538 InterPro: Oxygen-independent coproporphyrinogen III oxidase HemN; High confidence in function and specificity; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.818 |
ABO_2372 | ABO_2373 | ABO_2372 | ABO_2373 | Hypothetical protein. | Hypothetical protein. | 0.491 |
ABO_2372 | ABO_2375 | ABO_2372 | ABO_2375 | Hypothetical protein. | Conserved hypothetical protein. | 0.491 |
ABO_2372 | ccpR | ABO_2372 | ABO_2374 | Hypothetical protein. | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | 0.491 |
ABO_2373 | ABO_2372 | ABO_2373 | ABO_2372 | Hypothetical protein. | Hypothetical protein. | 0.491 |
ABO_2373 | ABO_2375 | ABO_2373 | ABO_2375 | Hypothetical protein. | Conserved hypothetical protein. | 0.783 |
ABO_2373 | ccpR | ABO_2373 | ABO_2374 | Hypothetical protein. | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | 0.949 |
ABO_2375 | ABO_2372 | ABO_2375 | ABO_2372 | Conserved hypothetical protein. | Hypothetical protein. | 0.491 |
ABO_2375 | ABO_2373 | ABO_2375 | ABO_2373 | Conserved hypothetical protein. | Hypothetical protein. | 0.783 |
ABO_2375 | ccpR | ABO_2375 | ABO_2374 | Conserved hypothetical protein. | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | 0.783 |
ccoO-1 | ABO_1922 | ABO_1350 | ABO_1922 | Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership. | Outer membrane protein W precursor., OmpW family; Specificity unclear. | 0.765 |
ccoO-1 | ccpR | ABO_1350 | ABO_2374 | Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership. | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | 0.453 |
ccoO-1 | coxB | ABO_1350 | ABO_1900 | Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership. | Cytochrome c oxidase, subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B). | 0.987 |
ccoO-1 | hemF | ABO_1350 | ABO_1342 | Cytochrome c oxidase, cbb3-type, subunit II; Identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership. | Coproporphyrinogen oxidase; Identified by match to TIGR protein family HMMTIGR00538 InterPro: Oxygen-independent coproporphyrinogen III oxidase HemN; High confidence in function and specificity; Belongs to the anaerobic coproporphyrinogen-III oxidase family. | 0.856 |
ccpR | ABO_1922 | ABO_2374 | ABO_1922 | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | Outer membrane protein W precursor., OmpW family; Specificity unclear. | 0.406 |
ccpR | ABO_2372 | ABO_2374 | ABO_2372 | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | Hypothetical protein. | 0.491 |
ccpR | ABO_2373 | ABO_2374 | ABO_2373 | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | Hypothetical protein. | 0.949 |
ccpR | ABO_2375 | ABO_2374 | ABO_2375 | (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG; High confidence in function and specificity. | Conserved hypothetical protein. | 0.783 |
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