STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpmA-2Phosphoglycerate mutase; Identified by match to TIGR protein family HMMTIGR00249; putative InterPro: Phosphoglycerate mutase family; Family membership. (225 aa)    
Predicted Functional Partners:
ABO_2404
Identified by match to PFAM protein family HMMPF00106 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
     0.847
ABO_2402
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
 
     0.641
ABO_0057
Conserved hypothetical protein.
  
     0.638
ABO_1719
(MaoC domain protein, putative) identified by match to PFAM protein family HMMPF01575 InterPro: MaoC-like dehydratase domain; Family membership.
 
     0.610
ABO_0977
Conserved hypothetical protein.
  
     0.604
ABO_0901
Oxidoreductase, putative; Identified by match to PFAM protein family HMMPF00384 InterPro: Prokaryotic molybdopterin oxidoreductases; High confidence in function and specificity; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
    0.579
ABO_1111
(tesA)(acyl-CoA thioesterase II) identified by match to PFAM protein family HMMPF02551; High confidence in function and specificity.
  
    0.539
ABO_1718
Transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership.
  
     0.533
ABO_2625
Conserved hypothetical protein.
  
     0.531
ABO_0958
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
 
    0.478
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.