STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2427Transcriptional regulator, LysR family; Identified by sequence similarity; putative InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family. (296 aa)    
Predicted Functional Partners:
ABO_2428
Identified by match to PFAM protein family HMMPF00903 InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; conserved hypothetical protein.
 
   
 0.879
ABO_1353
Transcriptional regulator, LysR family; Identified by sequencesimilarity; putative InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.719
ABO_0484
Transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership.
  
     0.658
ABO_0146
Transcriptional regulator, LysR family; Identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; Belongs to the LysR transcriptional regulatory family.
  
     0.601
ABO_2426
(metallo-beta-lactamase super family protein) identified by match to PFAM protein family HMMPF00753 InterPro: Metallo-beta-lactamase superfamily; Family membership.
  
    0.541
ABO_0028
Transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; High confidence in function and specificity.
  
     0.526
oxyR
Hydrogen peroxide-inducible genes activator (Morphology and auto-aggregation control protein). (transcriptional regulator LysR family) identified by match to PFAM protein family HMMPF03466; High confidence in function and specificity; Belongs to the LysR transcriptional regulatory family.
  
     0.455
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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