STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2445Conserved hypothetical protein. (363 aa)    
Predicted Functional Partners:
lysRS
lysyl-tRNA synthetase; Identified by sequencesimilarity; putative InterPro: tRNA synthetases class II (D K and N); High confidence in function and specificity.
 
  
 0.914
efp
Translation elongation factor P; Involved in peptide bond synthesis. Alleviates ribosome stalling that occurs when 3 or more consecutive Pro residues or the sequence PPG is present in a protein, possibly by augmenting the peptidyl transferase activity of the ribosome. Modification of Lys-34 is required for alleviation; Belongs to the elongation factor P family.
 
   
 0.828
ABO_1553
Conserved hypothetical protein; Function unclear.
  
   
 0.595
ABO_2444
Conserved hypothetical protein.
       0.523
ABO_2443
Conserved hypothetical protein; Identified by sequencesimilarity.
       0.434
cheR
(methyltransferase CheR-like) identified by match to PFAM protein family HMMPF00515; High confidence in function and specificity.
    
   0.423
cheR-2
(chemotaxis protein methyltransferase CheR-like) identified by sequence similarity; putative InterPro: CheR-type MCP methyl-transferase; High confidence in function and specificity.
    
   0.423
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.