Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2485Conserved hypothetical protein. (190 aa)    
Predicted Functional Partners:
ABO_2484
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
       0.541
ABO_1589
Conserved hypothetical protein.
  
     0.519
fpvA
Ferripyoverdine receptor precursor; Identified by sequence similarity; putative Interpro:; Family membership.
 
     0.477
alg8
Alginate biosynthesis protein Alg8; Function unclear.
  
     0.455
ABO_1708
Sensor histidine kinase; Identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Specificity unclear.
  
     0.431
algK
(alginate biosynthesis regulator AlgK) identified by sequence similarity; putative InterPro: TPR repeat; High confidence in function and specificity.
  
     0.415
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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