Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fpvAFerripyoverdine receptor precursor; Identified by sequence similarity; putative Interpro:; Family membership. (494 aa)    
Predicted Functional Partners:
fpvB
Ferripyoverdine receptor precursor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; Family membership.
 
     0.976
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
 
  
 0.753
ABO_1556
Membrane protein, putative; Identified by match to PFAM protein family HMMPF03977; Function unclear.
 
  
 0.735
ABO_2547
Membrane protein, putative; Identified by match to PFAM protein family HMMPF03977 shows similarity to uncharacterized iron-regulated membrane protein (DUF337).This is a family of uncharacterized iron-regulated membrane proteins; Function unclear.
 
  
 0.702
ABO_2092
(peptide synthetase, putative); identified by sequence similarity; putative; High confidence in function and specificity.
 
  
 0.699
ABO_1688
TonB-dependent siderophore receptor; Function unclear.
  
  
 0.627
pfeA
Outer membrane ferric enterobactin receptor; Identified by sequence similarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
 
  
 0.591
ABO_2138
TonB-dependent receptor; Identified by match to PFAM protein family HMMPF00593; Specificity unclear.
  
  
 0.586
ABO_1508
(membrane protein putative) identified by sequence similarity; Family membership.
 
  
 0.581
ABO_0073
Conserved hypothetical protein; Region start changed from 77784 to 77655 (-129 bases) regional start was changed to be in accordance with the results of the observations.
 
  
 0.557
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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