STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2491Hypothetical protein. (269 aa)    
Predicted Functional Partners:
ABO_1621
Outer membrane porin, putative; High confidence in function and specificity.
  
 
 0.610
ABO_0432
Conserved hypothetical protein.
  
     0.586
ABO_0997
Conserved hypothetical protein.
  
     0.584
ABO_2490
Hypothetical protein.
       0.551
ABO_0904
Conserved hypothetical protein; Identified by sequence similarity.
  
    0.546
gspL
General secretion pathway protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
  
     0.505
ABO_1572
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
  
     0.489
fhuE
Outer membrane ferric siderophore receptor identified by sequencesimilarity; putative InterPro: TonB-dependent receptor protein; High confidence in function and specificity.
  
     0.485
fecA
FecA-like outer membrane receptor identified by sequence similarity; putative; High confidence in function and specificity.
  
    0.474
ABO_2489
(conserved hypothetical protein) identified by Glimmer2; putative.
       0.462
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.