STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2523(RND transporter membrane fusion protein) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein; High confidence in function and specificity; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (405 aa)    
Predicted Functional Partners:
ABO_2522
(RND efflux transporter)(AcrB/AcrD/AcrF family protein) identified by match to PFAM protein family HMMPF03599 InterPro: Acriflavin resistance protein; conserved hypothetical protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.979
macB
ABC transporter, ATP-binding protein/permease, putative; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
  
 
 0.934
ABO_2630
(AcrB/C/D family cation/multidrug efflux pump; Transporter of the RND family of multidrug efflux pump) identified by match to PFAM protein family HMMPF03626 InterPro: Acriflavin resistance protein; Family membership; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.855
ABO_2746
AcrB/AcrD/AcrF family protein; Identified by sequence similarity; putative InterPro: Acriflavin resistance protein The E.coli acrA and acrB genes encode a multi-drug efflux system that isbelieved to protect the bacterium against hydrophobic inhibitors [MEDLINE:94012493]. Members of this family are integral membrane proteins some of which are involved in drug resistance. Proteins which belong to this family (AcrB/AcrD/AcrF family protein) include the P.aeruginosa multidrug resistance protein mexB, A.eutrophus cation efflux system protein czcA, and various R.meliloti nodulation proteins; [...]
 
 
 0.758
ABO_2524
(transcriptional regulator, putative) identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership.
 
     0.694
AcrB
AcrB/AcrD/AcrFa family protein; Identified by sequence similarity; putative InterPro: Hydrophobe/amphiphile efflux-1 HAE1; Family membership.
 
 
 0.646
ABO_0266
(cation multi-drug efflux pump, Transporter of the RND family of multidrug efflux pump, putative) identified by match to PFAM protein family HMMPF04165 InterPro: Acriflavin resistance protein; Family membership; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.595
czcA
Cation efflux system protein; Identified by match to PFAM protein family HMMPF04295 InterPro: Heavy metal efflux pump CzcA; Family membership; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.472
czcA3
(cobalt/zinc/cadmium efflux RND transporterpermease protein CzcA family) identified by match to PFAM protein family HMMPF04295 InterPro: Heavy metal efflux pump CzcA; Family membership; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.457
ABO_0250
Outer membrane protein identified by sequence similarity; putative InterPro: Outer membrane efflux protein; Function unclear.
 
 
 0.456
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.