STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2531Conserved hypothetical protein; Identified by sequencesimilarity; putative. (82 aa)    
Predicted Functional Partners:
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.596
ABO_2247
Conserved hypothetical protein.
  
   
 0.570
wrbA
Trp repressor binding protein; Identified by sequence similarity; putative InterPro: Flavodoxin; Family membership; Belongs to the WrbA family.
  
     0.568
lptD
Conserved hypothetical protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
  
     0.562
ABO_2532
(magnesium chelatase-related protein, putative) identified by sequence similarity;putative InterPro: Mg chelatase-related protein; Family membership.
       0.555
hemY
hemY protein; Identified by sequence similarity; putative InterPro: TPR repeat; Hypothetical protein.
  
     0.462
ABO_1223
Conserved hypothetical protein identified by sequencesimilarity; putative.
  
     0.439
glnK-2
Nitrogen regulatory protein P-II; Identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00543 InterPro: Nitrogen regulatory protein P-II; High confidence in function and specificity; Belongs to the P(II) protein family.
     
 0.429
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.