Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2532(magnesium chelatase-related protein, putative) identified by sequence similarity;putative InterPro: Mg chelatase-related protein; Family membership. (498 aa)    
Predicted Functional Partners:
dprA
(peptide deformylase)(smf family protein; DNA processing protein, DprA, putative) identified by sequence similarity; putative InterPro: SMF family; Family membership.
 
 0.929
ABO_2221
Conserved hypothetical protein; (competence protein ComF putative) identified by sequence similarity; putative.
 
  
 0.871
ABO_0585
Conserved hypothetical protein; InterPro: Uncharacterised protein family UPF0102; Belongs to the UPF0102 family.
 
  
 0.720
def-1
Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
      0.709
ruvC
Endonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group.
  
   
 0.557
ABO_2531
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
       0.555
rec2
(DNA internalization-related competence protein ComEC/Rec2) identified by match to PFAM protein family HMMPF03772 InterPro: DNA internalization-related competence protein ComEC/Rec2 Possibly exported; Family membership.
 
  
 0.550
ABO_1740
Identified by match to TIGR protein family HMMTIGR01259, TIGR00426; Family membership.
  
  
 0.509
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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