STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2539(Cytochrome c5, putative) identified by sequencesimilarity; putative; Family membership. (119 aa)    
Predicted Functional Partners:
ABO_2540
Cytochrome c5, putative; (cytochrome c5) identified by sequence similarity; putative InterPro: Cytochrome c class I a monoheme c-type cytochrome. it is unreactive with cytochrome c reductase or oxidase; High confidence in function and specificity.
 
    
0.808
cc4
(cytochrome c4) identified by sequencesimilarity; putative InterPro: Cytochrome c class I; High confidence in function and specificity.
 
   
 0.754
petC
(ubiquinol--cytochrome c reductase cytochrome c1) identified by sequencesimilarity; putative InterPro: Cytochrome c1; High confidence in function and specificity.
 
  
 0.702
ctaA
Cytochrome c oxidase assembly protein; Identified by similarity to Pfam protein family PF02628; High confidence in function and specificity.
 
     0.633
ABO_1346
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.559
petA
Ubiquinol--cytochrome c reductase, iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
 
  
 0.543
ABO_0499
Conserved hypothetical protein.
  
     0.493
phoR-2
Sensory box histidine kinase PhoR; Identified by sequence similarity; putative InterPro: Histidine kinase C-terminal; Specificity unclear.
       0.441
ABO_2542
Conserved hypothetical protein.
       0.441
ABO_1625
Conserved hypothetical protein; (oprB-2) (porin B) identified by sequencesimilarity; putative.
  
     0.436
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.