Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2546(fatty acid desaturase, putative) identified by sequencesimilarity; putative InterPro: Fatty acid desaturase type 2; High confidence in function and specificity. (313 aa)    
Predicted Functional Partners:
ABO_2545
(transcriptional regulator, putative) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership.
 
     0.742
ABO_0224
Conserved hypothetical protein.
  
     0.735
ABO_2455
Conserved hypothetical protein; (InterPro: contains Esterase/lipase/thioesterase family active site, PS50187).
  
     0.716
ABO_0218
Conserved hypothetical protein.
  
     0.643
nahD
2-hydroxychromene-2-carboxylate isomeraseputative identified by sequencesimilarity; putative InterPro: 2-hydroxychromene-2-carboxylate isomerase; High confidence in function and specificity.
  
     0.602
ABO_2697
Hypothetical protein.
  
     0.592
ABO_0223
Conserved hypothetical protein.
  
     0.549
ABO_1105
Conserved hypothetical protein.
  
     0.549
ABO_2450
Transcriptional regulator, TetR family; Identified by sequencesimilarity. InterPro: Bacterial regulatory proteins TetR family; Family membership.
  
    0.541
ABO_1717
Flavodoxin reductases (ferredoxin-NADPH reductase)putative; (oxidoreductase FAD-binding putative) identified by sequencesimilarity; putative InterPro: Oxidoreductase FAD and NAD(P)-binding domain; Family membership.
  
 0.535
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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