STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2551Conserved hypothetical protein; Identified by sequence similarity. (241 aa)    
Predicted Functional Partners:
ABO_2089
L-ornithine N5-oxygenase; Region start changed from 2380063 to 2380003 (-60 bases) region start changed to correct the mistake during contig update.
  
     0.546
ribD
(S)-2-hydroxy-fatty-acid dehydrogenase; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
  
  
 0.508
hrpA
ATP-dependent helicase HrpA; Identified by sequence similarity; putative InterPro: DEAD/DEAH box helicase; Family membership.
  
 
 0.440
iucB
Siderophore biosynthesis protein; Identify by sequence similarity; High confidence in function and specificity.
 
    0.427
ABO_2549
Hypothetical protein; Predicted by Glimmer/Critica.
       0.420
ABO_2550
Hypothetical protein; Predicted by Glimmer/Critica.
       0.420
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.