ABO_2558 protein (Alcanivorax borkumensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ABO_2558

Hypothetical protein; Predicted by Glimmer/Critica. (910 aa)

Predicted Functional Partners:

ABO_2559

0.827

ABO_2557

0.483

Your Current Organism:

Alcanivorax borkumensis

NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
ABO_2557	ABO_2558	(CBS domain protein) identified by match to PFAM protein family HMMPF04290 InterPro: CBS domain CBS domains are small intracellular modules of unknown function. They are mostly found in 2 or four copies within a protein. wo CBS domains are found in inosine-monophosphate dehydrogenase from all species, however the CBS domains are not needed for activity. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet; [...]	Hypothetical protein; Predicted by Glimmer/Critica.	0.483
ABO_2557	ABO_2559	(CBS domain protein) identified by match to PFAM protein family HMMPF04290 InterPro: CBS domain CBS domains are small intracellular modules of unknown function. They are mostly found in 2 or four copies within a protein. wo CBS domains are found in inosine-monophosphate dehydrogenase from all species, however the CBS domains are not needed for activity. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet; [...]	Putative membrane protein; Identify by sequence similarity; Function unclear.	0.482
ABO_2558	ABO_2557	Hypothetical protein; Predicted by Glimmer/Critica.	(CBS domain protein) identified by match to PFAM protein family HMMPF04290 InterPro: CBS domain CBS domains are small intracellular modules of unknown function. They are mostly found in 2 or four copies within a protein. wo CBS domains are found in inosine-monophosphate dehydrogenase from all species, however the CBS domains are not needed for activity. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet; [...]	0.483
ABO_2558	ABO_2559	Hypothetical protein; Predicted by Glimmer/Critica.	Putative membrane protein; Identify by sequence similarity; Function unclear.	0.827
ABO_2559	ABO_2557	Putative membrane protein; Identify by sequence similarity; Function unclear.	(CBS domain protein) identified by match to PFAM protein family HMMPF04290 InterPro: CBS domain CBS domains are small intracellular modules of unknown function. They are mostly found in 2 or four copies within a protein. wo CBS domains are found in inosine-monophosphate dehydrogenase from all species, however the CBS domains are not needed for activity. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet; [...]	0.482
ABO_2559	ABO_2558	Putative membrane protein; Identify by sequence similarity; Function unclear.	Hypothetical protein; Predicted by Glimmer/Critica.	0.827