STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2562Conserved hypothetical protein; Predicted metal-dependent hydrolase. (295 aa)    
Predicted Functional Partners:
ABO_2697
Hypothetical protein.
  
     0.735
ABO_2455
Conserved hypothetical protein; (InterPro: contains Esterase/lipase/thioesterase family active site, PS50187).
  
     0.601
ABO_2696
(oxidoreductase, putative) identified by sequence similarity; putative InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity.
  
     0.589
ABO_1603
Conserved hypothetical protein.
  
     0.536
nnrS
Conserved hypothetical protein; NnrS protein. pfam05940, This family consists of several bacterial NnrS like proteins. NnrS is a putative heme-Cu protein and a member of the short-chain dehydrogenase family. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem-and copper-containing membrane protein. Genes encoding putative orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase.
       0.501
ABO_2563
Conserved hypothetical protein; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family.
       0.497
ABO_2564
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF00675 InterPro: Insulinase family (Peptidase family M16).
       0.497
ABO_2565
Zinc protease, putative; Identified by sequencesimilarity; putative; Function unclear; Belongs to the peptidase M16 family.
       0.497
acdS-2
Identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.492
ABO_1762
Hypothetical protein; Identified by sequence similarity.
  
     0.480
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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