STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2581AcrR transcription regulator family protein. (255 aa)    
Predicted Functional Partners:
ABO_2580
Coproporphyrinogen oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.600
ABO_2450
Transcriptional regulator, TetR family; Identified by sequencesimilarity. InterPro: Bacterial regulatory proteins TetR family; Family membership.
  
     0.553
ABO_2546
(fatty acid desaturase, putative) identified by sequencesimilarity; putative InterPro: Fatty acid desaturase type 2; High confidence in function and specificity.
  
    0.535
ABO_0224
Conserved hypothetical protein.
  
     0.462
ABO_0220
Hypothetical protein.
  
     0.455
ABO_2115
Hypothetical protein; Identified by sequence similarity.
  
    0.449
ABO_0999
Conserved hypothetical protein.
  
     0.415
ABO_2579
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF02639 InterPro: DUF188; Belongs to the UPF0178 family.
       0.411
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.