STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2588Transposase-like protein; Identified by sequencesimilarity; putative InterPro: Integrase catalytic core; Family membership. (96 aa)    
Predicted Functional Partners:
tnpB-2
(transposase subunit B, putative) identified by sequencesimilarity; putative InterPro: Integrase catalytic core; High confidence in function and specificity.
 
    0.785
ABO_0083
Transposase, putative; Transposase identified by match to PFAM protein family HMMPF00665;putative InterPro: Integrase catalytic core; Family membership.
 
    0.783
ABO_2587
Transporter, LysE family; Identified by sequence similarity and by match to PFAM protein family HMMPF01810; putative InterPro: Lysine exporter protein (LYSE/YGGA); Family membership.
       0.752
ABO_2586
(conserved hyphotetical protein).
       0.594
tnpA-3
(transposase, putative) identified by match to PFAM protein family HMMPF04218 InterPro: Transposase IS911 HTH and LZ region; High confidence in function and specificity.
 
  
 0.527
ABO_2589
Hypothetical protein.
       0.515
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.