Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2596(iron ABC transporter permease protein putative) identified by sequence similarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership. (524 aa)    
Predicted Functional Partners:
ABO_2597
(iron ABC transporter periplasmic iron-bindingprotein putative) identified by sequence similarity; putative InterPro: Bacterial extracellular solute-binding protein family 1; Family membership.
 
 
 0.998
ABO_0717
ABC transporter, ATP-binding protein; Identified by sequence similarity and by match to PFAM protein family HMMPF0005; putative InterPro: AAA ATPase superfamily; Specificity unclear; Belongs to the ABC transporter superfamily.
 0.993
ABO_2598
Oxygenase; Family membership.
       0.647
ABO_2599
Oxygenase; Family membership.
       0.585
pepP
(aminopeptidase P II, xaa-pro aminopeptidase, x-pro aminopeptidase, aminoacylproline aminopeptidase) identified by sequence similarity; putative InterPro: metallopeptidase family M24; High confidence in function and specificity; Belongs to the peptidase M24B family.
     
 0.467
ABO_0240
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.436
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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