Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ABO_2597(iron ABC transporter periplasmic iron-bindingprotein putative) identified by sequence similarity; putative InterPro: Bacterial extracellular solute-binding protein family 1; Family membership. (341 aa)    
Predicted Functional Partners:
ABO_2596
(iron ABC transporter permease protein putative) identified by sequence similarity; putative InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership.
 
 
 0.998
ABO_0717
ABC transporter, ATP-binding protein; Identified by sequence similarity and by match to PFAM protein family HMMPF0005; putative InterPro: AAA ATPase superfamily; Specificity unclear; Belongs to the ABC transporter superfamily.
 
 
 0.971
ABO_0239
Uncharacterized iron-regulated protein; Function unclear.
  
    0.774
algZ
(two-component system sensor protein, alginate biosynthesis) identified by Glimmer2; High confidence in function and specificity.
   
   0.733
ABO_2598
Oxygenase; Family membership.
       0.650
ABO_2351
(universal stress protein family) identified by match to PFAM protein family HMMPF00582.
   
    0.641
ABO_1694
Conserved hypothetical protein.
   
    0.624
ABO_2599
Oxygenase; Family membership.
       0.586
ABO_0240
Conserved hypothetical protein; Identified by Glimmer2; putative.
 
    0.521
pepP
(aminopeptidase P II, xaa-pro aminopeptidase, x-pro aminopeptidase, aminoacylproline aminopeptidase) identified by sequence similarity; putative InterPro: metallopeptidase family M24; High confidence in function and specificity; Belongs to the peptidase M24B family.
       0.453
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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