STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepP(aminopeptidase P II, xaa-pro aminopeptidase, x-pro aminopeptidase, aminoacylproline aminopeptidase) identified by sequence similarity; putative InterPro: metallopeptidase family M24; High confidence in function and specificity; Belongs to the peptidase M24B family. (423 aa)    
Predicted Functional Partners:
hmd
5, 10-methylenetetrahydromethanopterin cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
    
 0.706
ABO_2599
Oxygenase; Family membership.
  
  
 0.675
ABO_2598
Oxygenase; Family membership.
 
  
 0.667
ABO_2601
Conserved hypothetical protein; Identified by sequencesimilarity; putative; Belongs to the UPF0149 family.
     
 0.667
ABO_2603
Conserved hypothetical protein; Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division.
 
   
 0.632
purF
Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
 
    0.605
map
Methionine aminopeptidase; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
 
   
 0.551
nudJ
MutT/NUDIX family protein; Region start changed from 1451926 to 1451869 (-57 bases); Belongs to the Nudix hydrolase family. NudJ subfamily.
 
   
 0.548
ABO_2602
Hypothetical protein.
 
     0.493
hisS
Histidyl-tRNA synthetase; Identified by sequencesimilarity; putative InterPro: Histidyl-tRNA synthetase; High confidence in function and specificity.
  
  
 0.473
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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