Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_2608Conserved hypothetical protein; Identified by sequence similarity. (319 aa)    
Predicted Functional Partners:
ABO_0996
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
     0.646
ABO_2609
Hypothetical protein predicted.
       0.554
ABO_1039
Conserved hypothetical protein; Protein of family with unknown function (DUF539).
  
     0.540
ABO_2607
Hypothetical protein; Predicted by Glimmer/Critica.
       0.526
algS
Sigma factor algU negative regulatory protein AlgS; Identified by match to PFAM protein family HMMPF03872 RseA_N; High confidence in function and specificity.
  
     0.497
ABO_1261
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF03695; Belongs to the UPF0149 family.
  
     0.456
ABO_1784
Non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; putative InterPro: AMP-dependent synthetase and ligase; Family membership.
   
 
 0.445
glpE
Thiosulfate sulfurtransferase; Identified by sequence similarity InterPro: Rhodanese/cdc25 fold; High confidence in function and specificity.
 
     0.432
ABO_2616
Transcriptional regulator ArsR family identified by match to PFAM protein family HMMPF01022 InterPro: SAM (and some other nucleotide) binding motif; Family membership.
 
 
   0.426
ABO_1244
Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF01118.
  
   0.423
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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