STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppnPConserved hypothetical protein; Catalyzes the phosphorolysis of diverse nucleosides, yielding D-ribose 1-phosphate and the respective free bases. Can use uridine, adenosine, guanosine, cytidine, thymidine, inosine and xanthosine as substrates. Also catalyzes the reverse reactions. (94 aa)    
Predicted Functional Partners:
ABO_1878
Conserved hypothetical protein distantly.
     
 0.901
pyrR
Transcriptional regulator PyrR; Identified by sequence similarity; putative; High confidence in function and specificity.
     
  0.900
ABO_0278
Identified by match to PFAM protein family HMMPF00702 InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership.
     
  0.900
ABO_0657
(decarboxylase family protein) identified by sequencesimilarity; putative; Family membership.
     
  0.900
hpt
Hypoxanthine phosphoribosyltransferase; Identified by sequence similarity; putative InterPro: Phosphoribosyl transferase; High confidence in function and specificity.
     
  0.900
ABO_1438
5'-nucleotidase; 5-nucleotidase putative identified by sequencesimilarity; putative; conserved hypothetical protein.
     
  0.900
upp
Uracil phosphoribosyltransferase; Catalyzes the conversion of uracil and 5-phospho-alpha-D- ribose 1-diphosphate (PRPP) to UMP and diphosphate.
     
  0.900
cpdB;
(cpdB) (2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (5`-nucleotidase)) identified by sequence similarity; putative InterPro: 5-Nucleotidase; Family membership; Belongs to the 5'-nucleotidase family.
     
  0.900
ABO_2625
Conserved hypothetical protein.
       0.411
ABO_0695
Conserved hypothetical protein; Region start changed from 773425 to 773371 (-54 bases).
  
     0.407
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.