STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2628Membrane protein, putative; Identified by match to PFAM protein family HMMPF01594 InterPro: Domain of unknown function DUF20; Specificity unclear. (373 aa)    
Predicted Functional Partners:
ABO_2627
(hypothetical protein) predicted by Glimmer/Critica.
       0.838
ABO_2629
Ca2+/Na+antiporter protein; Predicted Ca2+/Na+ antiporter; conserved hypothetical protein.
  
    0.610
ABO_2630
(AcrB/C/D family cation/multidrug efflux pump; Transporter of the RND family of multidrug efflux pump) identified by match to PFAM protein family HMMPF03626 InterPro: Acriflavin resistance protein; Family membership; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
   0.475
mtdA
Multidrug resistance protein mdtA precursor; conserved hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
     0.455
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.