STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dpsDNA-binding stress protein; Belongs to the Dps family. (166 aa)    
Predicted Functional Partners:
clpS
Conserved hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
   
 
 0.920
wrbA
Trp repressor binding protein; Identified by sequence similarity; putative InterPro: Flavodoxin; Family membership; Belongs to the WrbA family.
  
  
 0.725
copA-2
Copper-transporting P-type ATPase (EC 3.6.3.4); High confidence in function and specificity.
  
  
 0.590
ahpF
(alkyl hydroperoxide reductase F subunit) identified by sequence similarity; putative InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity.
 
  
 0.590
ABO_0551
Sigma54 modulation protein) identified by sequence similarity;putative InterPro: Sigma 54 modulation protein.
  
    0.569
ABO_2632
(peroxiredoxin family protein/glutaredoxin, putative); identified by sequencesimilarity; putative InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Family membership.
     
 0.547
bolA
bolA protein; Identified by sequence similarity; putative InterPro: BolA-like protein; High confidence in function and specificity; Belongs to the BolA/IbaG family.
   
  
 0.538
ABO_2342
Redox protein, putative; Identified by sequencesimilarity; putative; Family membership.
  
  
 0.523
ABO_2663
Conserved hypothetical protein.
  
  
 0.523
ABO_2439
Conserved hypothetical protein.
  
  
 0.512
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.