STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2644(hypothetical protein); identified by sequence similarity. (616 aa)    
Predicted Functional Partners:
ABO_2643
Hypothetical protein predicted by Glimmer/Critica.
       0.645
ABO_0370
Conserved hypothetical protein.
  
     0.486
ABO_1787
Transposase OrfA identified by match to PFAM protein family HMMPF04218; Family membership.
  
     0.485
ABO_2645
(hydrolase, alpha/beta hydrolase fold family, putative) identified by match to TIGR protein family HMMTIGR01738 InterPro: Esterase/lipase/thioesterase family active site; Family membership.
   
   0.474
ABO_2646
Hypothetical protein predicted by Glimmer/Critica.
 
     0.465
ABO_0814
Conserved hypothetical protein.
  
     0.443
ABO_2491
Hypothetical protein.
  
     0.433
ABO_2455
Conserved hypothetical protein; (InterPro: contains Esterase/lipase/thioesterase family active site, PS50187).
  
     0.424
ABO_1526
Conserved hypothetical protein.
   
0.402
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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