Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
pilUType IV pili twitching motility protein PilT; Identified by sequence similarity InterPro: Bacterial type II secretion system protein E; Function unclear. (373 aa)    
Predicted Functional Partners:
pilD
Leaderpeptidase and N-methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
   
 0.855
pilM
Type IV fimbrial biogenesis protein PilM.
  
  
 0.855
tapC
Type IV pilus assembly protein TapC; Identified by sequence similarity; Family membership.
 
   
 0.819
pilT
Type IV pili twitching motility protein PilT; Identified by sequence similarity InterPro: Bacterial type II secretion system protein E; Function unclear.
 
  
0.803
gspF
Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP F family,identified by sequence similarity. InterPro: Bacterial type II secretion system protein; Family membership.
 
   
 0.777
pilQ
Fimbrial assembly protein pilQ precursor; InterPro: General (type II) secretion pathway (GSP) D protein; Hypothetical protein.
  
  
 0.770
pilO
Type 4 fimbrial biogenesis protein pilO.
 
  
 0.723
pilN-2
Type IV pili biogenesis protein PilN.
  
  
 0.713
pilP
Type 4 fimbrial biogenesis protein PilP.
  
   
 0.656
ABO_0132
LysM domain protein; Region start changed from 142733 to 142994 (-261 bases).
  
    0.573
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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