Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gtrATRAP-type sodium-dependent glutamate permease integral membrane protein (small) Pfam: Tripartite ATP-independent periplasmic transporters, DctQ component TMHMM: reporting 4 transmembrane helices; High confidence in function and specificity. (186 aa)    
Predicted Functional Partners:
gtrB
Putative TRAP-type sodium-dependent glutamate permease integral membrane protein (large). identified by sequence similarity; putative SignalP: reporting signal peptide TMHMM: predicting 12 transmembrane helices; High confidence in function and specificity.
  
 0.993
dctQ
(TRAP-type C4-dicarboxylate transport system, small permease component) identified by sequence similarity; putative TMHMM reporting 4 transmembrane helices; High confidence in function and specificity.
   
 
  0.903
dctQ-2
TRAP-type C4-dicarboxylate transport system, small permease component. identified by sequence similarity. Pfam:Tripartite ATP-independent periplasmic transporters,DctQ component TMHMM: reporting 5 transmembrane helices; High confidence in function and specificity.
     
  0.900
ABO_2689
TRAP-type transports system extracellular solute binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.827
ABO_2688
(long-chain acyl-CoA thioester hydrolase family protein, putative) identified by match to PFAM protein family HMMPF01662 InterPro: long-chain acyl-CoA thioester hydrolase; High confidence in function and specificity.
       0.811
pstS
(phosphate ABC transporter periplasmicphosphate-binding protein) identified by sequencesimilarity; putative InterPro: Phosphate-binding protein; High confidence in function and specificity.
       0.479
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
Server load: medium (62%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.