Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
gtrBPutative TRAP-type sodium-dependent glutamate permease integral membrane protein (large). identified by sequence similarity; putative SignalP: reporting signal peptide TMHMM: predicting 12 transmembrane helices; High confidence in function and specificity. (456 aa)    
Predicted Functional Partners:
gtrA
TRAP-type sodium-dependent glutamate permease integral membrane protein (small) Pfam: Tripartite ATP-independent periplasmic transporters, DctQ component TMHMM: reporting 4 transmembrane helices; High confidence in function and specificity.
  
 0.993
dctM-2
TRAP-type C4-dicarboxylate transport system, dctM subunit. Identified by sequence similarity; putative TMHMM: reporting 9 transmembrane helices TIGRFAM:dctM; High confidence in function and specificity.
  
  
 
0.925
dctM
(TRAP dicarboxylate transporter DctM subunit putative) identified by sequence similarity; putative InterPro: DedA family TMHMM reporting 11 transmembrane helices; Family membership.
  
  
 
0.924
ABO_2689
TRAP-type transports system extracellular solute binding protein; Part of the tripartite ATP-independent periplasmic (TRAP) transport system.
 
  
 0.838
ABO_2688
(long-chain acyl-CoA thioester hydrolase family protein, putative) identified by match to PFAM protein family HMMPF01662 InterPro: long-chain acyl-CoA thioester hydrolase; High confidence in function and specificity.
       0.811
dctP-2
TRAP dicarboxylate transporter DctP subunit. identified by sequencesimilarity. Pfam: SBP_bac7: Bacterial extracellular solute-binding protein, family 7; Family membership.
 
   
 0.492
pstS
(phosphate ABC transporter periplasmicphosphate-binding protein) identified by sequencesimilarity; putative InterPro: Phosphate-binding protein; High confidence in function and specificity.
       0.477
dctP
(TRAP dicarboxylate transporter DctP subunit) identified by sequencesimilarity; putative; Family membership.
 
   
 0.408
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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