Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ABO_2694Conserved hypothetical protein; Identified by sequencesimilarity; putative InterPro: Uncharacterized protein family UPF0003. (764 aa)    
Predicted Functional Partners:
ABO_1687
(hypothetical signal peptide protein) identified by match to PFAM protein family HMMPF03734.
  
     0.724
ABO_1654
Hypothetical protein.
  
     0.606
ABO_2088
Ferric iron reductase protein, putative; (penicillin-binding protein 2) identified by match to PFAM protein family HMMPF00905; High confidence in function and specificity.
  
     0.521
ABO_1558
Conserved hypothetical protein.
 
     0.496
ABO_1723
Conserved hypothetical protein.
  
     0.473
ABO_2370
Identified by sequence similarity; putative InterPro: Periplasmic binding protein; Family membership.
  
 
   0.400
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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