Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ABO_2700Conserved hypothetical protein; Identified by match to PFAM protein family HMMPF04076. (628 aa)    
Predicted Functional Partners:
cpdB;
(cpdB) (2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (5`-nucleotidase)) identified by sequence similarity; putative InterPro: 5-Nucleotidase; Family membership; Belongs to the 5'-nucleotidase family.
 
     0.858
ABO_2743
Conserved hypothetical protein; Identified by sequence similarity; putative InterPro: conserved hypothetical protein (UPF0010_DUF); Belongs to the glucose-6-phosphate 1-epimerase family.
    
   0.750
ABO_1942
Conserved hypothetical protein; Identified by sequencesimilarity; putative.
    
 
 0.542
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
   
 
 0.490
ABO_2699
Phospholipase D/Transphosphatidylase family protein; Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases and related enzymes identified by sequence similarity; putative; Family membership.
     
 0.477
ABO_1010
Hypothetical protein; InterPro: Cyclic nucleotide-binding domain.
  
     0.438
ABO_1185
Identified by match to PFAM protein family HMMPF03675 InterPro: Cytochrome c class I; Family membership.
  
     0.401
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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