STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
msrA-2Peptide methionine sulfoxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine. (353 aa)    
Predicted Functional Partners:
dsbD
Thiol:disulfide interchange protein DsbD; Identified by match to PFAM protein family HMMPF00085 InterPro: Cytochrome c biogenesis protein transmembrane region; High confidence in function and specificity.
   
 
 0.944
ABO_0032
Conserved hypothetical protein; Identified by sequence similarity. InterPro: Thioredoxin.
   
 0.840
ABO_0816
Thioredoxin, putative; (trx-1) (thioredoxin) identified by match to PFAM protein family HMMPF00085 InterPro: Thioredoxin; High confidence in function and specificity.
   
 0.840
dsbE
Thiol:disulfide interchange protein DsbE; Identified by sequence similarity; putative InterPro: Periplasmic protein thiol:disulfide oxidoreductase DsbE; High confidence in function and specificity.
   
 0.840
ABO_2006
(thioredoxin family protein, putative) identified by sequence similarity; putative InterPro: Thioredoxin; High confidence in function and specificity.
   
 0.840
ABO_0996
Conserved hypothetical protein; Identified by Glimmer2; putative.
  
    0.756
katA
Catalase; Identified by sequence similarity;putative InterPro: Catalase; High confidence in function and specificity.
   
 
 0.719
ABO_2632
(peroxiredoxin family protein/glutaredoxin, putative); identified by sequencesimilarity; putative InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Family membership.
  
 
 0.710
GSHPx
Glutathione peroxidase; High confidence in function and specificity; Belongs to the glutathione peroxidase family.
  
 
 0.701
macB
ABC transporter, ATP-binding protein/permease, putative; Part of the tripartite efflux system MacAB-TolC. MacB is a non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP-binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
     
 0.653
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.