STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
alkSalkB1GHJ regulator; This protein activates the expression of AlkB1 in the presence of alkanes. (872 aa)    
Predicted Functional Partners:
alkB1
Alkane 1-monooxygenase; Catalyzes the hydroxylation of n-alkanes and fatty acids in the presence of a NADH-rubredoxin reductase and rubredoxin. It preferably hydroxylases C5-C12 hydrocarbons. Belongs to the fatty acid desaturase type 1 family. AlkB subfamily.
 
   
 0.823
ABO_0671
Oxidoreductase (acting on paired donors with incorporation of molecular oxygen with NADH or NADPH as one donor, and incorporation of one atom of oxygen) identified by match to PFAM protein family HMMPF00355 InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; Family membership.
 
    0.778
ABO_0672
Oxidoreductase (acting on paired donors with incorporation of molecular oxygen with NADH or NADPH as one donor, and incorporation of one atom of oxygen) identified by match to PFAM protein family HMMPF00355 InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; Family membership.
 
    0.778
ABO_0669
Hypothetical protein predicted by Glimmer/Critica.
  
     0.774
ABO_0674
Conserved hypothetical protein.
  
     0.770
ABO_0667
(BNR domain protein) identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat BNR repaets are short repeats that were found in glycosyl hydrolases as well as other extracellular proteins of unknown function; Function unclear.
  
     0.769
ABO_0668
Hydrolase (acting on carbon-carbon bonds in ketonic substances) identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership.
  
     0.746
ABO_0675
Transcriptional regulator, TetR family; Family membership.
  
   
 0.719
alkG
Rubredoxin; Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.
 
   
 0.706
ABO_0012
Hypothetical protein.
  
     0.699
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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