STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ureFUrease accessory protein UreF; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter. (229 aa)    
Predicted Functional Partners:
ureD
Urease accessory protein UreD; Required for maturation of urease via the functional incorporation of the urease nickel metallocenter.
 
 
 0.987
ureE
Urease accessory protein UreE; Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly. Belongs to the UreE family.
  
 0.986
ureC
(urease alpha subunit, urea amidohydrolase) identified by sequence similarity; putative identified by match to PFAM protein families: HMMPF01979 and HMMPF00449; putative; High confidence in function and specificity; Belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.
 
 
 0.980
ureG
Urease accessory protein UreG; Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG.
 
 
 0.969
ureB
(urease beta subunit, urea amidohydrolase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00699 and TIGRFAM protein family HMMTIGR00192 InterPro: Urease beta subunit; High confidence in function and specificity.
 
 
 0.960
ureA
(urease gamma subunit, urea amidohydrolase) identified by sequence similarity; putative identified by match to PFAM protein family HMMPF00547 and TIGRFAM protein family HMMTIGR00193 InterPro: Urease gamma subunit; High confidence in function and specificity.
 
 
 0.953
ureJ
Urease accessory protein UreJ; Identified by sequence similarity; putative; Family membership.
 
  
 0.888
ABO_2511
(branched-chain amino acid ABC transporter permease protein putative) identified by sequence similarity and by match to PFAM protein family HMMPF02653; putative InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Function unclear.
 
   
 0.474
ABO_2509
(branched-chain amino acid ABC transporter, putative); identify by sequence similarity; Family membership.
 
   
 0.457
ABO_2510
(branched-chain amino acid ABC transporter permease protein putative) identified by match to PFAM protein family HMMPF02653; putative; Family membership; Belongs to the binding-protein-dependent transport system permease family.
 
   
 0.445
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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