STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
parA(ParA family ATPase) identified by sequencesimilarity; putative InterPro: ParA family ATPase; Family membership. (265 aa)    
Predicted Functional Partners:
parB
Identified by match to PFAM protein family HMMPF02195 InterPro: ParB-like partition protein; High confidence in function and specificity; Belongs to the ParB family.
 
 0.997
ABO_2075
Transcriptional repressor protein, probably korB; Family membership; Belongs to the ParB family.
 
 
 0.889
gidB
Methyltransferase GidB; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.759
gidA
Glucose-inhibited division protein A; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
  
    0.694
ftsK
Cell division protein FtsK; Identified by sequence similarity; putative InterPro: FtsK/SpoIIIE family This domain contains a putative ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli FTSK_ECOLI and the stage III sporulation protein E SpoIIIE; Family membership.
  
  
 0.605
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids.
 
 
 
 0.513
alg8
Alginate biosynthesis protein Alg8; Function unclear.
  
 
 0.487
ABO_1657
Hypothetical protein.
  
 
 0.433
Your Current Organism:
Alcanivorax borkumensis
NCBI taxonomy Id: 393595
Other names: A. borkumensis SK2, Alcanivorax borkumensis SK2, Alcanivorax borkumensis str. SK2, Alcanivorax borkumensis strain SK2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.