STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDJ98726.1Urocanate reductase. (593 aa)    
Predicted Functional Partners:
SDK83734.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.998
SDL11741.1
4Fe-4S binding domain-containing protein.
 
 0.968
SDK76008.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.944
SDK82804.1
Glycine/D-amino acid oxidase.
  
 0.923
SDL27656.1
2,4-dienoyl-CoA reductase.
 
 0.897
SDJ97046.1
Fumarase, class I alpha subunit.
  
 
 0.851
SDJ97087.1
Fumarate hydratase subunit beta.
  
 
 0.837
SDK88025.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.772
SDK94104.1
Succinyl-CoA synthetase, alpha subunit.
  
 0.756
SDK94144.1
FdrA protein.
  
 0.756
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.