STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK04777.1Trk system potassium uptake protein TrkH. (482 aa)    
Predicted Functional Partners:
SDK04740.1
Trk system potassium uptake protein TrkA.
 
 
 0.990
SDK83734.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
   
   0.711
SDK75072.1
Trk system potassium uptake protein TrkA.
  
 
 0.701
SDK16330.1
Voltage-gated potassium channel.
  
 
 0.700
SDK92058.1
Trk system potassium uptake protein TrkA.
  
 
 0.700
SDK71845.1
TrkA-C domain-containing protein.
  
 
 0.692
SDK91979.1
Hypothetical protein.
  
 
 0.670
SDK04814.1
5-methyltetrahydrofolate--homocysteine methyltransferase.
       0.519
SDK04699.1
Hypothetical protein.
       0.474
SDK43013.1
NusB antitermination factor; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
  
 0.407
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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