STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK05254.1TRAP-type C4-dicarboxylate transport system, small permease component. (174 aa)    
Predicted Functional Partners:
SDK05291.1
TRAP transporter, DctM subunit.
 
   0.935
SDK05214.1
Tripartite ATP-independent transporter solute receptor, DctP family.
 
    0.918
SDL00468.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.796
SDL29533.1
TRAP transporter, DctM subunit.
  
   0.789
SDJ92409.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.788
SDK06113.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.787
SDJ91971.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.785
SDK06206.1
TRAP transporter, DctM subunit.
  
   0.777
SDK22728.1
Tripartite ATP-independent transporter solute receptor, DctP family.
  
    0.771
SDL29619.1
Extracellular solute-binding protein, family 7.
  
    0.769
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.