STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK15277.1DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain. (230 aa)    
Predicted Functional Partners:
SDK83138.1
Signal transduction histidine kinase.
 0.998
SDK76237.1
Hpt domain-containing protein.
 
0.996
SDK15233.1
His Kinase A (phospho-acceptor) domain-containing protein.
  0.991
SDJ99303.1
PAS domain S-box-containing protein.
0.971
SDK12915.1
PAS domain S-box-containing protein.
 0.956
SDK00463.1
Signal transduction histidine kinase.
 0.954
SDJ97373.1
PAS domain S-box-containing protein.
 0.943
SDK24116.1
PAS domain S-box-containing protein.
 
 0.922
SDK07648.1
Diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.921
SDK41194.1
PAS/PAC sensor signal transduction histidine kinase.
  0.901
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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