STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK37029.1Ribonuclease BN, tRNA processing enzyme. (245 aa)    
Predicted Functional Partners:
SDK37072.1
Hypothetical protein.
       0.595
SDK49993.1
tRNA nucleotidyltransferase (CCA-adding enzyme); Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
  
 0.593
SDK36989.1
Tetratricopeptide repeat-containing protein.
   
   0.563
SDK11679.1
RNAse Z.
  
     0.496
SDK76008.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
       0.450
SDK83734.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
       0.450
rny
Ribonucrease Y; Endoribonuclease that initiates mRNA decay.
     
 0.433
SDJ98965.1
histidyl-tRNA synthetase; Belongs to the class-II aminoacyl-tRNA synthetase family.
    
 
 0.425
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
  
 0.424
guaA
GMP synthase (glutamine-hydrolyzing); Catalyzes the synthesis of GMP from XMP.
  
    0.415
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.