Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDK43341.1 | SDK43382.1 | SAMN05660472_01280 | SAMN05660472_01281 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | Hypothetical protein. | 0.990 |
SDK43341.1 | SDK43463.1 | SAMN05660472_01280 | SAMN05660472_01283 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 0.615 |
SDK43341.1 | SDK43546.1 | SAMN05660472_01280 | SAMN05660472_01285 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | Hypothetical protein. | 0.545 |
SDK43341.1 | coaD | SAMN05660472_01280 | SAMN05660472_01284 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.609 |
SDK43341.1 | recG | SAMN05660472_01280 | SAMN05660472_01282 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.744 |
SDK43341.1 | rpmB | SAMN05660472_01280 | SAMN05660472_01279 | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.632 |
SDK43382.1 | SDK43341.1 | SAMN05660472_01281 | SAMN05660472_01280 | Hypothetical protein. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.990 |
SDK43382.1 | SDK43463.1 | SAMN05660472_01281 | SAMN05660472_01283 | Hypothetical protein. | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | 0.623 |
SDK43382.1 | SDK43546.1 | SAMN05660472_01281 | SAMN05660472_01285 | Hypothetical protein. | Hypothetical protein. | 0.645 |
SDK43382.1 | coaD | SAMN05660472_01281 | SAMN05660472_01284 | Hypothetical protein. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.666 |
SDK43382.1 | recG | SAMN05660472_01281 | SAMN05660472_01282 | Hypothetical protein. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.816 |
SDK43382.1 | rpmB | SAMN05660472_01281 | SAMN05660472_01279 | Hypothetical protein. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.618 |
SDK43463.1 | SDK43341.1 | SAMN05660472_01283 | SAMN05660472_01280 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.615 |
SDK43463.1 | SDK43382.1 | SAMN05660472_01283 | SAMN05660472_01281 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Hypothetical protein. | 0.623 |
SDK43463.1 | SDK43546.1 | SAMN05660472_01283 | SAMN05660472_01285 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Hypothetical protein. | 0.899 |
SDK43463.1 | coaD | SAMN05660472_01283 | SAMN05660472_01284 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | Phosphopantetheine adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family. | 0.991 |
SDK43463.1 | polA | SAMN05660472_01283 | SAMN05660472_01091 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.408 |
SDK43463.1 | recG | SAMN05660472_01283 | SAMN05660472_01282 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.667 |
SDK43463.1 | rpmB | SAMN05660472_01283 | SAMN05660472_01279 | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD. | LSU ribosomal protein L28P; Belongs to the bacterial ribosomal protein bL28 family. | 0.567 |
SDK43546.1 | SDK43341.1 | SAMN05660472_01285 | SAMN05660472_01280 | Hypothetical protein. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.545 |
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