STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK82929.1Two component transcriptional regulator, LytTR family. (256 aa)    
Predicted Functional Partners:
SDK82977.1
Sensor histidine kinase YesM.
 
 
 0.951
SDK83138.1
Signal transduction histidine kinase.
    
 0.894
SDK93163.1
Two-component system, CitB family, sensor histidine kinase DctS.
  
 
 0.739
SDK76237.1
Hpt domain-containing protein.
    
 0.732
SDK05327.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.721
SDJ90779.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.708
SDJ92300.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
 
 0.680
SDJ98768.1
Two-component system, sensor histidine kinase YesM.
 
 
 0.616
SDJ99303.1
PAS domain S-box-containing protein.
    
 0.609
proA
Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family.
    
   0.596
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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