STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK90984.1Poly-gamma-glutamate biosynthesis protein PgsC/CapC. (141 aa)    
Predicted Functional Partners:
SDK91014.1
Poly-gamma-glutamate synthase PgsB/CapB.
 
  
 0.954
SDK91102.1
TRAP-type C4-dicarboxylate transport system, large permease component.
 
     0.880
SDK91136.1
Hypothetical protein.
 
     0.825
SDJ89056.1
Poly-gamma-glutamate synthase PgsB/CapB.
 
  
 0.808
SDK90948.1
Poly-gamma-glutamate system protein.
       0.794
SDK90916.1
Signal transduction histidine kinase.
 
     0.729
SDJ89142.1
Poly-gamma-glutamate synthesis protein (capsule biosynthesis protein).
 
  
 0.654
SDK91161.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
 
   
 0.646
SDJ89183.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
 
   
 0.605
SDK91044.1
Succinylglutamate desuccinylase / Aspartoacylase family protein.
       0.604
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.