STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDK91979.1Hypothetical protein. (169 aa)    
Predicted Functional Partners:
SDK92018.1
Trk system potassium uptake protein TrkH.
  
 
 0.922
SDK92058.1
Trk system potassium uptake protein TrkA.
       0.689
SDK04777.1
Trk system potassium uptake protein TrkH.
  
 
 0.670
SDK75037.1
Trk system potassium uptake protein TrkH.
  
 
 0.670
cinA
Competence/damage-inducible protein cinA; Belongs to the CinA family.
    
 0.650
SDK43013.1
NusB antitermination factor; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
   0.608
SDJ80554.1
Uroporphyrinogen III methyltransferase / synthase.
  
    0.509
SDK92095.1
Two-component system, OmpR family, sensor histidine kinase KdpD.
  
  
 0.493
SDK92133.1
Two-component system, OmpR family, KDP operon response regulator KdpE.
       0.488
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
   
    0.463
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.