STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL00877.1Signal transduction histidine kinase. (463 aa)    
Predicted Functional Partners:
SDK76237.1
Hpt domain-containing protein.
 0.999
SDL00839.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.983
SDK24116.1
PAS domain S-box-containing protein.
 
0.967
SDL00914.1
Hypothetical protein.
 
     0.965
SDK76200.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
 
 0.937
SDL14098.1
Two-component system, OmpR family, response regulator VicR.
  0.928
SDK48753.1
Chemotaxis protein methyltransferase CheR.
   
 0.917
SDK83138.1
Signal transduction histidine kinase.
 
0.914
SDK41150.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
  0.911
SDL03997.1
Ribose-binding protein.
 
  
  0.905
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.