STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL10404.1Dihydrolipoamide dehydrogenase. (444 aa)    
Predicted Functional Partners:
SDJ97469.1
Lipoate-protein ligase.
 
 
 0.954
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
  
 0.950
SDL27762.1
Thioredoxin.
   
 0.930
SDK02372.1
Small redox-active disulfide protein 2.
   
 0.929
SDK83734.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 0.926
SDK76008.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
 0.910
SDK75814.1
Uncharacterized membrane protein YdjX, TVP38/TMEM64 family, SNARE-associated domain.
      0.902
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 0.871
SDJ94286.1
Glutamate dehydrogenase (NAD); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 
 0.814
SDL10356.1
Uridine phosphorylase.
 
     0.779
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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