STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL15228.1Cysteine desulfurase family protein. (380 aa)    
Predicted Functional Partners:
SDK53784.1
Nitrogen fixation protein NifU.
  
 0.964
selD
Selenophosphate synthase; Synthesizes selenophosphate from selenide and ATP.
  
 0.853
SDK37927.1
Metal-dependent hydrolase, endonuclease/exonuclease/phosphatase family.
    
   0.783
SDK70416.1
Thioredoxin reductase (NADPH).
   
 
  0.741
SDK76008.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
 
 0.708
SDL29966.1
Selenium metabolism protein YedF; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.650
SDL10646.1
Xanthine dehydrogenase accessory factor.
 
     0.520
mobA
Molybdenum cofactor guanylyltransferase; Transfers a GMP moiety from GTP to Mo-molybdopterin (Mo-MPT) cofactor (Moco or molybdenum cofactor) to form Mo-molybdopterin guanine dinucleotide (Mo-MGD) cofactor.
 
 
  0.483
SDK83734.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
  
  
 0.480
SDK19683.1
Protein of unknown function.
 
     0.475
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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