STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDL20548.1Hypothetical protein. (111 aa)    
Predicted Functional Partners:
SDL20602.1
Phage major tail protein, phi13 family.
  
    0.882
SDL20507.1
Phage protein, HK97 gp10 family.
       0.773
SDL20412.1
Phage head-tail adaptor, putative, SPP1 family.
       0.711
SDL20362.1
Uncharacterized phage protein (possible DNA packaging).
       0.707
SDL20452.1
Hypothetical protein.
       0.682
SDL20157.1
Phage terminase-like protein, large subunit, contains N-terminal HTH domain.
       0.631
SDL20650.1
Hypothetical protein.
       0.556
SDL20282.1
Hypothetical protein.
       0.510
SDL20235.1
Phage portal protein, HK97 family.
       0.497
SDL20321.1
Phage major capsid protein, HK97 family.
       0.469
Your Current Organism:
Natronincola ferrireducens
NCBI taxonomy Id: 393762
Other names: DSM 18346, N. ferrireducens, Natronincola ferrireducens Zhilina et al. 2009, VKM B-2402, strain Z-0511
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.